PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC164_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 175aa    MW: 19812 Da    PI: 7.6632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC164_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-182170255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykG+r +k +g+WvAeIr+p   +kr+r +lg++ t+e Aa+a++ a  +l+g
  RrC164_p6 21 PYKGIRMRK-WGKWVAEIREP---NKRTRLWLGSYSTPEAAARAYDTAVFYLRG 70
               59*****99.**********9...337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7742178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-302179IPR001471AP2/ERF domain
SMARTSM003802.5E-392184IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-212279IPR016177DNA-binding domain
CDDcd000185.57E-282280No hitNo description
PfamPF008473.3E-122270IPR001471AP2/ERF domain
PRINTSPR003675.9E-92233IPR001471AP2/ERF domain
PRINTSPR003675.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDGGGVADVA VAMTTRKRER PYKGIRMRKW GKWVAEIREP NKRTRLWLGS YSTPEAAARA  60
YDTAVFYLRG PTARLNFPEL LNGEKFSEED MSGDTIRKKA TEVGAQVDAL GTAVLNNRHR  120
VFGQSRESDD DSSKKYHRNY QNGELEEDDK SLKSGGWLLE RVDLNKLPDP ESSDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152282667ATERF1
3gcc_A2e-152282667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529931e-130AK352993.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112363.11e-116PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotQ9FH949e-99ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM4F7R31e-116M4F7R3_BRARP; Uncharacterized protein
STRINGBra037124.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-100DREB and EAR motif protein 2